Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:109 nt. Distance to run of Ts=0 nt. Size=17 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=17 nt. Delta G= -3.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
catttctctagggatcctcttagctgaggatcttctttgtacctcttttgattcgaaaagaggtgctattgtgagttgccaatagcaacgatccaccttc
gtttttgaaaagatacatcagttgctaagggaacttttcagaaaatatcataaaaaactcccaagattttggcttggaaagcgagcctttcttgctactt
ttgttacaacaaaagtgttctattttaacgtgcgtatcatttgtgactaagagatagacttgctttctttatctatcttctgtattggaaagaaagcccc
TTG
CpB0015 --- CpB0016
Gene: CpB0015 GI: 33241350 BI number: CpB0015 GOG: ------- Description: outer membrane protein 7
Gene: CpB0016 GI: 33241351 BI number: CpB0016 GOG: ------- Description: outer membrane protein
t a
t t a a
t g g g
a g gc
gc tg
at ta
at cg
cg gc
cg gc
tttcttgctacttttgttacaacaaaagtgttctattttaacgtgcgtatcatttgtgactaagagatagacttgctttctttatctatcttctgtattggaaagaaagccccTTG
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