Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:168 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G= -8.80 kcal/mol
Antiterminator: Size=34 nt. Delta G= -8.10 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-16.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGAATTGCGTGGGTCATCTCGCAATTACAATGTAGACTTAGGAGCAAAATACCAATT
CTAAtgcgttagctttggtaaagagctccatacatcgaagggaaaagagcttttaagatttcttgaaggctcttttcgatttcgatttccattttag
tgttttgctaaaacactttctaatttttttcttttgttttctacattgaaaaaaagagagttacggcagctgtaaagtttttaatattgctccctttgtt
ccatttatgtagcgttcagactttgcactaaaacgagggtgtcatATG
CpB0019 --- CpB0020
Gene: CpB0019 GI: 33241354 BI number: CpB0019 GOG: ------- Description: outer membrane protein 5
Gene: CpB0020 GI: 33241355 BI number: CpB0020 GOG: ------- Description: outer membrane protein
gc
t g
At
At
Ta
Cg aa
T c g g
T t cg
At tg
At a a
Cg c a
Cg a a
At t a tt
Ta a | a t
A a c | gc
A a cg at
A g ta at
A a cg tg
Cg gc ta
Gc at ta
At gt tg
Gc at cg
Gc at gc
tcttttcgatttcgatttccattttagtgttttgctaaaacactttctaatttttttcttttgttttctacattgaaaaaaagagagttacggcagctgtaaagtttttaatattgctccctttgttccatttatgtagcgttcagactttgcactaaaacgagggtgtcatATG
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