Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:206 nt. Distance to run of Ts=3 nt. Size=27 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=12 nt. Delta G= -3.60 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -5.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gtccaatgtaaacaattctagaagataagcatgtagaggttagcagggagtTTGTCAAGGACGAGAGTTCGAGTCTCTC
CACCTCCATTATTTAAAAAAATTATTTTAAAATGCTACTCATCCCCTCTTAACGAGGA
GAATCTGTCTTTTTTACCAAATTTAGACAATGTCTTCCTAAAGTCTTTAAAGAAATCA
AATATCCATTAAaaaacccttctagatttcatagaaatagaaaagaaagataagttgttttataattcttaatgaaaaaatttatttcatt
ataaggcgattcttATG
CpB0108
Gene: CpB0108 GI: 33241443 BI number: CpB0108 GOG: NOG09581 Description: hypothetical protei
gg
a t
g t
a a
tg
gc
ta
| g
| g
| g
a a
cg
gt G
aT C A
aT T G
tG T T
aT GC
gC AT
a A GC
a | AT
g | AG GC
a | G A C C
tA CG A A
cG AT GC
tG GT GC
tA GC AT
CCATTATTTAAAAAAATTATTTTAAAATGCTACTCATCCCCTCTTAACGAGGAGAATCTGTCTTTTTTACCAAATTTAGACAATGTCTTCCTAAAGTCTTTAAAGAAATCAAATATCCATTAAaaaacccttctagatttcatagaaatagaaaagaaagataagttgttttataattcttaatgaaaaaatttatttcattataaggcgattcttATG
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