                                                                        Gene putatively regulated by attenuation in C_pneumoniae_TW_183

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:166 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-19.70 kcal/mol
Antiterminator: Size=50 nt.     Delta G= -6.00 kcal/mol
Anti-antiterminator:   Size=48 nt.     Delta G= -9.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atgtctcagaaattctgagagagatcgcatttaggattttcttaaacacgactcaccttgtttttgaaccaggagagatcggggattaaaaaggcaagag
ggcagagttcgtgaggtcacgtactctgcctttcttgttacaaacacgttttaaaattaaggaaattttttaatagaaacccgttctttaaaatacgttt
ctttaattcttattgaataagataattcactatttttagatcctaaattttaagtggtttttgttatgcttcttatagagaatagctgcaaagattagag
TTG

    CpB0466 Gene: CpB0466     GI: 33241799     BI number: CpB0466     GOG: -------     Description: hypothetical protei            ga           a  g           a  g            cg            gc           g  a tt       a  g t  g      a  | ta       a  | ta       a  | gc       a  | t  c       ta ta        tg cg        at cg        gt a  a       gc cg       g  g       gg ta        gt       a  t cg        cg        gc |  a       ta        ta at       a  |       gc gc       g  |       cg cg       a  |      t  t |  g      g  |       ta a  g      a  |       gc c  g      g  |       at a  a      g  |       gc at       a  |       at at        cg        cg ta        cg        gc ta        at        gc                         tttcttgttacaaacacgttttaaaattaaggaaattttttaatagaaacccgttctttaaaatacgtttctttaattcttattgaataagataattcactatttttagatcctaaattttaagtggtttttgttatgcttcttatagagaatagctgcaaagattagagTTG     ..................................................................................................................