                                                                        Gene putatively regulated by attenuation in C_pneumoniae_TW_183

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:170 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-13.50 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -4.30 kcal/mol
Anti-antiterminator:   Size=35 nt.     Delta G= -5.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACACAATGCTGTGCTCTTGAAGATTGTGTCCTTCACCACCAATATAGGCAATGACTTC
CTGCCCGTTAGATAGTCGCACCCAAGCAACTTTCCTTAAAGCCGAGTTCGGCTTCTTA
GGAGTTTTTGTTTTTACTTGAAGGCAAACTCCCCGCTTTTGTGGGCACTTCTGCAAAG
CTGGGGATTTCTTTCTAGCTAGACTTGACTTACGTCTTTTACGTATTAATTGATTAAT
GGTGGGCATgtattcttctcgtttcaacctcactactacaagcatggaaatatagagtaaggctctctTTG

    CpB0575 Gene: CpB0575     GI: 33241905     BI number: CpB0575     GOG: -------     Description: hypothetical protei            CC           C  A   C       A  A C  G       CG C  T       GC        GT GT       C  A      A  T TA        TA        GC CG        GC        CG C  A       AT        CG T  T      T  T       GC TA        AT        AT CG        GC        AT AT       A  C      |  C GC       T  T      A  T TG       T  T      T  T A  C      G  A       TA A  A      C  A       CG C  C      C  A       CG GC        CG        TA GC        GC        TG                         TTTTTGTTTTTACTTGAAGGCAAACTCCCCGCTTTTGTGGGCACTTCTGCAAAGCTGGGGATTTCTTTCTAGCTAGACTTGACTTACGTCTTTTACGTATTAATTGATTAATGGTGGGCATgtattcttctcgtttcaacctcactactacaagcatggaaatatagagtaaggctctctTTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_pneumoniae_TW_183                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:177 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-12.90 kcal/mol Antiterminator: Size=40 nt.     Delta G= -4.30 kcal/mol Anti-antiterminator:   Size=25 nt.     Delta G= -4.30 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ACACAATGCTGTGCTCTTGAAGATTGTGTCCTTCACCACCAATATAGGCAATGACTTC CTGCCCGTTAGATAGTCGCACCCAAGCAACTTTCCTTAAAGCCGAGTTCGGCTTCTTA GGAGTTTTTGTTTTTACTTGAAGGCAAACTCCCCGCTTTTGTGGGCACTTCTGCAAAG CTGGGGATTTCTTTCTAGCTAGACTTGACTTACGTCTTTTACGTATTAATTGATTAAT GGTGGGCATgtattcttctcgtttcaacctcactactacaagcatggaaatatagagtaaggctctctTTG     CpB0575 Gene: CpB0575     GI: 33241905     BI number: CpB0575     GOG: -------     Description: hypothetical protei            GC           C  A           T  C            GC            AC           T  A       GT            AA       A  T   C        GG        GC C  G       AC        CG C  T      T  A       CG GT        TA        GC TA        GC        AT CG       C  T       AT C  A      C  T      |  C T  T      C  T      A  T TA       G  C      T  T CG       T  C       TA AT       C  T       CG GC        CT        CG TG        TA        TA                         GTTTTTGTTTTTACTTGAAGGCAAACTCCCCGCTTTTGTGGGCACTTCTGCAAAGCTGGGGATTTCTTTCTAGCTAGACTTGACTTACGTCTTTTACGTATTAATTGATTAATGGTGGGCATgtattcttctcgtttcaacctcactactacaagcatggaaatatagagtaaggctctctTTG     ..................................................................................................................