                                                                        Gene putatively regulated by attenuation in C_pneumoniae_TW_183

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:170 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-19.10 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -5.60 kcal/mol
Anti-antiterminator:   Size=42 nt.     Delta G=-29.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AGAAAATACCCACGTGTATTAAattctaaggaattatcctaaagcagagcgatattccgctctgctttaggatagctttcaaag
aagtaccgctttagtaccttacgtactaaagcggtttttttgttttataagctcttcaatccaatcgtagagtttcttaatcaaagatattatttaagtt
tctgaaatcctaagatttattttaaaagcccatctttttaggtatgtaattaaaatttttaattaatgttttcctagtgtaacctgcttctttaggaact
acactaggagaacggtATG

    CpB0578 Gene: CpB0578     GI: 33241909     BI number: CpB0578     GOG: NOG08722     Description: sulfur-rich protei at t  t a  c gc        gc cg       a  t gc       t  t        t at        at       t  a gc        gc       c  c at       |  a       cg cg       g  a       at gc       a  a       ta at        tg        gc at        ta        at at        ta        ta ta        cg        ta cg        gt        ta cg        ta        cg ta       c  c       gc at       t  c       cg ta        cg        cg tg        gc        at                         ttttttgttttataagctcttcaatccaatcgtagagtttcttaatcaaagatattatttaagtttctgaaatcctaagatttattttaaaagcccatctttttaggtatgtaattaaaatttttaattaatgttttcctagtgtaacctgcttctttaggaactacactaggagaacggtATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_pneumoniae_TW_183                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:177 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-19.10 kcal/mol Antiterminator: Size=35 nt.     Delta G= -5.60 kcal/mol Anti-antiterminator:   Size=38 nt.     Delta G=-27.60 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case AGAAAATACCCACGTGTATTAAattctaaggaattatcctaaagcagagcgatattccgctctgctttaggatagctttcaaag aagtaccgctttagtaccttacgtactaaagcggtttttttgttttataagctcttcaatccaatcgtagagtttcttaatcaaagatattatttaagtt tctgaaatcctaagatttattttaaaagcccatctttttaggtatgtaattaaaatttttaattaatgttttcctagtgtaacctgcttctttaggaact acactaggagaacggtATG     CpB0578 Gene: CpB0578     GI: 33241909     BI number: CpB0578     GOG: NOG08722     Description: sulfur-rich protei at t  t       at a  c      g  a gc       g  g        t cg        ac       t  a gc        tt       c  c at       |  t       cg gc       t  t       at at       t  c       ta cg        ca        gc gc        ga        at at        ta        ta at        cg        ta at        ta        ta ta        ca        cg cg       g  g       gc cg       c  t       cg ta        ca        cg at        tc        at                         ttttttgttttataagctcttcaatccaatcgtagagtttcttaatcaaagatattatttaagtttctgaaatcctaagatttattttaaaagcccatctttttaggtatgtaattaaaatttttaattaatgttttcctagtgtaacctgcttctttaggaactacactaggagaacggtATG     ..................................................................................................................