Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:196 nt. Distance to run of Ts=2 nt. Size=31 nt. Delta G= -8.90 kcal/mol
Antiterminator: Size=38 nt. Delta G= -4.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTTATAGAGTCTGTGCGTACTCTTTGAGCTGCTGCCTTGTTTCCTTTCTCTGCTTTA
GCTAAGTCGTGTTGGATGCTATCCAGCAGGTCTTTCATtttttttgccgtatcttttagcgccatgaaaagc
gtcctctagtcgctgttttaaactatttttacttgttttaatttttaattagtttgtttgttcaaattcatgcaaccattttttagagaaaataagactt
ttgtaagttattgttattttgttatgagaacacacttctttgtttatcaatgtgttaatttataaaatgtTTG
CpB0917 --- CpB0919
Gene: CpB0917 GI: 33242248 BI number: CpB0917 GOG: ------- Description: hypothetical protein
Gene: CpB0919 GI: 33242249 BI number: CpB0919 GOG: NOG04853 Description: putative chltr phosphoprotei
TT
T A
CG
GC
T T C
C A G T
TA TA
CG AT
| T GC
| C GC
| G TA
| T TG
T G GC
T T TA
T T G |
CG CG
CG TG
TA | T
T T GC
TG AT
GC AT
TCATtttttttgccgtatcttttagcgccatgaaaagcgtcctctagtcgctgttttaaactatttttacttgttttaatttttaattagtttgtttgttcaaattcatgcaaccattttttagagaaaataagacttttgtaagttattgttattttgttatgagaacacacttctttgtttatcaatgtgttaatttataaaatgtTTG
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