Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:159 nt. Distance to run of Ts=0 nt. Size=18 nt. Delta G= -6.60 kcal/mol
Antiterminator: Size=41 nt. Delta G=-11.90 kcal/mol
Anti-antiterminator: Size=67 nt. Delta G= -4.95 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGTTCTGGATAAGCTAATTCTCTACCACGGAACATGCATGTAATTTTGACTTTATTTC
CTTTTTCAACGAACGTACGCGCTTGCTTTAACTTAGTCGAAAAATCATTTTCGTCTAT
GTTAGGCTTAAGCTTAACTTCTTTTATGCGCACCTGATGTTGAGCTTTTTTACTATCT
TTTTCCTTTTTTGTCAGACCATAACGGTATTTACCGTAGTCCATGATCTTACATACAG
GAGGCTCGCTATTTGAAGCAACTTCAACTAAATCAAGACCTGCCTCTCGGGCTAAATC
CAAagcatctTTG
CpB1027
Gene: CpB1027 GI: 33242358 BI number: CpB1027 GOG: ------- Description: hypothetical protei
GT
C A
A C
A G
GC
CG
| C
AT
AT
CG
T C
T T
T T
T T
T A
C A TC
C C A A
T T AT
T T AT
T | AT
A | AT
T | GC
T | CG
TA T T
CG GC
AT AT
GC TA
TG T T TA
TA CG T A
TA AT CG
TA AT GC
A A T | GT
A A TA AT
T T TG TA
GC CG TA
TA GC GC
TTCTTTTATGCGCACCTGATGTTGAGCTTTTTTACTATCTTTTTCCTTTTTTGTCAGACCATAACGGTATTTACCGTAGTCCATGATCTTACATACAGGAGGCTCGCTATTTGAAGCAACTTCAACTAAATCAAGACCTGCCTCTCGGGCTAAATCCAAagcatctTTG
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