Gene putatively regulated by attenuation in C_pneumoniae_TW_183

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:78 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-11.70 kcal/mol
Antiterminator: Size=60 nt.     Delta G= -4.33 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGAAAAGTTTTGATAGGGACGATCATTACGAACGTTCTCAAGAACTTTTAGATAACA
TGGAGAGTTCTTTCGAAGCCCTTTCAAGAATCTTAAATTACATGCGTGAACTAGATCA
AGTGTATCTCCACTCCTTAAGAGGATAAATCCACAGAAGAAATATTATGACTGTATCT
TACCAATCCATATCGACTCCTCCTCCTGAAGGAGAGTTTGATATTTTTGTAGATGGAA
ATGCCACTGAAGAAGCTGTTGTTGCTGCAGAAGTACAAGTAGCTCTCCCTGCAGGAGA
GCAAtatgcgATG

    CpB1057


Gene: CpB1057     GI: 33242388     BI number: CpB1057     GOG: NOG05415     Description: hypothetical protei


  T
A  G
T  A
T  C
 AT
 TG
 AT
A  A
 AT
 GC
 AT
 AT
|  A
|  C
|  C        T
|  A      C  G
|  A      C  A
G  T       TA
A  C       CG
C  C       CG
A  A       TA
C  T      C  |
C  A       CG
T  T       TA
A  C       CG
A  G      |  T
A  A       AT
T  C       GT
 AT        CG
 GC        TA
 GC        AT
 AT        TA
 GC        AT
            TTTTGTAGATGGAAATGCCACTGAAGAAGCTGTTGTTGCTGCAGAAGTACAAGTAGCTCTCCCTGCAGGAGAGCAAtatgcgATG
    ..................................................................................................................