Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:203 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -8.40 kcal/mol
Antiterminator: Size=60 nt. Delta G=-14.42 kcal/mol
Anti-antiterminator: Size=26 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tgaggccccagaggagaaaccgagtttgctggataaagcgcgttctttatttactcgcgaggaccatacctagcataactccaagagttgtgtttcttta
aaaattctttgaataaaatactatatgttagtagcttagtgggtttaacttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctcta
tcaccacagctacccccccccccccccagaccactctgtaggggcttttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggt
GTG
CpB1097 --- CpB1098
Gene: CpB1097 GI: 33242427 BI number: CpB1097 GOG: ------- Description: Hb4
Gene: CpB1098 GI: 33242428 BI number: CpB1098 GOG: ------- Description: pHB5 protei
a
t t
t t
t t
c a
t c
t t
gc
cg
gc
cg
| a
| g
| g
| a
g c
a c
a a
at
ta
at a c
g a gc
g a gt a
ta ta c a
cg cg cg
gc gc ta
tg ta cg
t c | t at
t g ta at
gt ta tg
at gc at
gc at cg
Gt gc gt
ttctttaaaaattctttgaataaaatactatatgttagtagcttagtgggtttaacttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctctatcaccacagctacccccccccccccccagaccactctgtaggggcttttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggtGTG
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