Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:87 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -9.10 kcal/mol
Antiterminator: Size=21 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGAAGAACTCGCTTGCATGCTAGAAAACCATATCAGCGTGTCTCCTATATTTTCACA
AAACTCTCCTATCGGCTTAATGACTCTAGAGGAATTTCAAAAGACACAAGAAAATTTC
AATGCATCGCTTTTAAGCTCTGAGCTGACCACTAAAATTTTCTAAaagccccctagtctttggtatc
agaggtctttttttacaaaagatctcttgtttaatcgagatttaatcacttaaattgaaagaaaaataattgtgattaaactatttcttctggtaagttt
atgctcctatcttattgGAT
_v11 --- _v12
Gene: _v11 GI: _v11 BI number: _v11 GOG: ------- Description: tRNA-Val
Gene: _v12 GI: _v12 BI number: _v12 GOG: ------- Description: tRNA-As
t
t a
ta t c
g t ta
gc ta
ta ta
tg ta
ta cg
cg ta
tg gt
| t gc
gc at
at gc
ttgtttaatcgagatttaatcacttaaattgaaagaaaaataattgtgattaaactatttcttctggtaagtttatgctcctatcttattgGAT
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