Gene putatively regulated by attenuation in C_pneumoniae_TW_183
Characteristics of the secondary structures
Terminator: Distance to gene:130 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-10.50 kcal/mol
Antiterminator: Size=50 nt. Delta G=-15.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAATGGTCACTTACTGCAGAAGCTCGTTTAATTAACGAGAGAGCTGCTCACGTATCTG
GTCAGTTCAGATTCTAAagatttgcttagaatttctcctcaccttgttatcagagtctacatgttaggctctgatttatgctcagagc
ttcttaatttctgagcaatttttattccccccctacttcacatcacatcaagacaaatgaattatttacttatgctattttctaatagcttcctgtagat
tacacgcttgcgttaaaagcattattacactactataccccttaatccagtttgCGC
_v23
Gene: _v23 GI: _v23 BI number: _v23 GOG: ------- Description: tRNA-Gl
t
a g
c t
at
ta
cg
tg
gc
at
gc
at
cg
ta
at
| t t
| t c t
| a t a
t t t a
tg c t
gc gt
t t at
t c gc
c a at
c | cg
a | ta
cg cg
ta gc
cg ta
atttttattccccccctacttcacatcacatcaagacaaatgaattatttacttatgctattttctaatagcttcctgtagattacacgcttgcgttaaaagcattattacactactataccccttaatccagtttgCGC
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