                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:202 nt.     Distance to run of Ts=1 nt.   Size=32 nt.     Delta G= -9.30 kcal/mol
Antiterminator: Size=27 nt.     Delta G=-12.50 kcal/mol
Anti-antiterminator:   Size=56 nt.     Delta G=-12.95 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGATACCGTGATGTTCGTCTCCCCGCTGCTCTATTTCCTCGTGCATCACTGGTGAtc
ttTCACCGGTTGATGCCGGTACATAAAAGAATGTTTTTCTTATATTCCGGTTTTGTTT
TTAGAGGAACTCCTCTGTTGACGGTATCGTGATCTTCGGTTTGCCGGAACCAGGTCTG
GAGCACCTGCGGCAGTCTTGCTGTTCGCGGGTTTTCCCCGTTTTTGGCTACTCTGCCT
TTTTTCGGTTCTGCGGCTCGCGGCCAGACAATCCGGCATGGTTCCCCGGAGAATGCGG
TTTCCCGATCTTG

    CT0235 --- hisS --- CT0237 Gene: CT0235     GI: 21673074     BI number: CT0235     GOG: COG1762     Description: PTS system, IIA component Gene: hisS     GI: 21673075     BI number: CT0236     GOG: COG0124     Description: histidyl-tRNA synthetase Gene: CT0237     GI: 21673076     BI number: CT0237     GOG: NOG43416     Description: conserved hypothetical protei GC T  T C  C G  T C  A C  T C  T C  T T  C C  C T  T GC                  GA CG                 T  T T  T                 TG TG                  GC GC        ct        GC TA       t  t       CG AT        AT        CG GC        GC        AT TA        TA       |  A GC        GC       |  C |  T       GC       |  A CG        TG       |  T CG        CG       C  A AT       |  T       TA |  G       AT        tA TA        CG        tA At        TA        cG Gc        AT        tA                         ATGTTTTTCTTATATTCCGGTTTTGTTTTTAGAGGAACTCCTCTGTTGACGGTATCGTGATCTTCGGTTTGCCGGAACCAGGTCTGGAGCACCTGCGGCAGTCTTGCTGTTCGCGGGTTTTCCCCGTTTTTGGCTACTCTGCCTTTTTTCGGTTCTGCGGCTCGCGGCCAGACAATCCGGCATGGTTCCCCGGAGAATGCGGTTTCCCGATCTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [GT] COG1762 Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) ... can be seen here [J] COG0124 Histidyl-tRNA synthetase ... can be seen here     ..................................................................................................................