                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:136 nt.     Distance to run of Ts=1 nt.   Size=23 nt.     Delta G= -8.10 kcal/mol
Antiterminator: Size=58 nt.     Delta G=-22.10 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G=-13.67 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTTAGGCATGAGCCAAGAAACCGCCAGTGCGACGTCACTCATAGCGTTGCTGCTGCCG
GTCGGACTTCTCGGCGTATACGAATATTATCAGGCCGGCAAGATCACGACGGAGCACA
TCTGGTTCGGACTGATCATCGCCCTGGGCCTTTTCGCCGGCGCTTTCTTCGGCGCAAA
GCTGGCAATTGAACTCTCAAACGATCTTTTAAGAAGGATGTTCGCTGTTTTTCTTGTT
TTAGTAGCAATCCGCCTTTGGTATTAAccagcagtattggcaaacctataacccaagcacacattaccATG

    CT0295 Gene: CT0295     GI: 21673134     BI number: CT0295     GOG: COG0776     Description: DNA-binding protein HU-alpha, putativ            AT           C  C            AT            CG           G  G AT        AT A  A       GT G  T       GC C  T       CG A  A      A  G T  T      G  A A  C      C  C T  A       AT G  G       CG CG        TA GC        AT GC        GC CG       |  A TG       A  T       TT C  C      A  C      T  T TA        CG       C  C TA        GC        CG CG        GC        GC |  A      |  C       GC AT       |  T      G  | GC       |  G      T  | |  A       CG       C  | GC        CG        CG CG        GC        CG TA        GC        GC GC        AT        CG                         CTTTCTTCGGCGCAAAGCTGGCAATTGAACTCTCAAACGATCTTTTAAGAAGGATGTTCGCTGTTTTTCTTGTTTTAGTAGCAATCCGCCTTTGGTATTAAccagcagtattggcaaacctataacccaagcacacattaccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG0776 Bacterial nucleoid DNA-binding protein ... can be seen here     ..................................................................................................................