                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:193 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-20.10 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -5.65 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G=-13.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GATTTTTCTGGTGTTTGGCGTTGCGAAAGGGGGTTCGAAAGCGTGAagcgttcggcggaaagggca
taaaaaaaagcgcaggataacctgcgctttttttttcttttctgTGGAGCTAAGGAGACTCGAACTCCTGACCCTT
TGCATGCCATGCAAATGCTCTACCAACTGAGCTATAGCCCCatcgacaaggcttaattatcagaaaaaaa
atttgcatttccaacagctttttttgaatcttgggggtgaaagttttaaaagctgaaaaaaaatgacattatgggtctgctgtacagtATG

    CT0315 Gene: CT0315     GI: 21673154     BI number: CT0315     GOG: COG2177     Description: cell division protein, putativ GG G  G A  G AT AT GC CG |  A G  A TA TG         a GC       a  a CG       g  g GT       g  g       ta G  G       cg       a  a TA        gc        gc Ta       g  a       gc Tg       c  t       at Gc       t  a       cg Tg       t  a       gc |  t      g  a       cg |  t      c  a       gc |  c      g  a       at |  g      a  a       at G  g      A  a       at Gc       G  a       at Tg        Tg        at Cg        Gc        at Ta        Cg        at Ta        Gc        at                         tcttttctgTGGAGCTAAGGAGACTCGAACTCCTGACCCTTTGCATGCCATGCAAATGCTCTACCAACTGAGCTATAGCCCCatcgacaaggcttaattatcagaaaaaaaatttgcatttccaacagctttttttgaatcttgggggtgaaagttttaaaagctgaaaaaaaatgacattatgggtctgctgtacagtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [D] COG2177 Cell division protein ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tepidum_TLS                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:200 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-15.60 kcal/mol Antiterminator: Size=39 nt.     Delta G= -5.65 kcal/mol Anti-antiterminator:   Size=33 nt.     Delta G= -5.00 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GATTTTTCTGGTGTTTGGCGTTGCGAAAGGGGGTTCGAAAGCGTGAagcgttcggcggaaagggca taaaaaaaagcgcaggataacctgcgctttttttttcttttctgTGGAGCTAAGGAGACTCGAACTCCTGACCCTT TGCATGCCATGCAAATGCTCTACCAACTGAGCTATAGCCCCatcgacaaggcttaattatcagaaaaaaa atttgcatttccaacagctttttttgaatcttgggggtgaaagttttaaaagctgaaaaaaaatgacattatgggtctgctgtacagtATG     CT0315 Gene: CT0315     GI: 21673154     BI number: CT0315     GOG: COG2177     Description: cell division protein, putativ             c           g  g   A       g  g A  A      c  a G  G       ta GC        ta TG       g  g AT       c  g tG       g  g       ta |  A      a  c      a  a |  a      A  a       gc g  g      G  t       gc a  c      T  a       at cg       G  a       cg at       C  a       gc t  t      G  a       cg gc        Aa        gc tg        Aa        at cg        Aa        at gc        Ga        at                         ttttttcttttctgTGGAGCTAAGGAGACTCGAACTCCTGACCCTTTGCATGCCATGCAAATGCTCTACCAACTGAGCTATAGCCCCatcgacaaggcttaattatcagaaaaaaaatttgcatttccaacagctttttttgaatcttgggggtgaaagttttaaaagctgaaaaaaaatgacattatgggtctgctgtacagtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [D] COG2177 Cell division protein ... can be seen here     ..................................................................................................................