Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:161 nt. Distance to run of Ts=2 nt. Size=24 nt. Delta G= -8.50 kcal/mol
Antiterminator: Size=46 nt. Delta G=-11.50 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-16.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATAGTGCTGGCGACCGCCCTCTTGCTAACGAGCGATTCGCGCCTGAAGGCGATTGTG
TCGATGGGCGTGCTCGGCTTTGGTGTTGGTATGATCTTCATCATCTACGGCGCGCCCG
ACGTGGCGCTGACCACTTTTGTTGCCATCGAGACGCTGAACGTCATTCTCTTTGTGCT
GGTGCTGGCCCATCTGCCGAAGTTCACCTCTCGTTCGCGCACCACCGGGCGGATTCGC
GCTGCTCAAACTCAGAACCGGTAAaacggattgttaggcggacaatcacaaatcataaggagataaacATG
CT0485
Gene: CT0485 GI: 21673320 BI number: CT0485 GOG: ------- Description: hypothetical protei
TT
C C
AT TA
G G AT
CG GC
TG TA
GC AT
TG | C
GT T T
T G G A
T C GC
AT TG
GC TG AC
CG GC G G
G G TG C T
GC GC CG
AT G G CG
AT T C GC
GT T | CG
T | T | GC
CG C | | T
CG GC | G
GT GC C A
CG CG GC
GT TA GC
ACTTTTGTTGCCATCGAGACGCTGAACGTCATTCTCTTTGTGCTGGTGCTGGCCCATCTGCCGAAGTTCACCTCTCGTTCGCGCACCACCGGGCGGATTCGCGCTGCTCAAACTCAGAACCGGTAAaacggattgttaggcggacaatcacaaatcataaggagataaacATG
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