                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:114 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G=-12.20 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -6.24 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tccgtctttgtgcaggagaggaggtggagacgcttctgtcgtatgccttttgctgctgatctttgtttttgaatgcctgatgtcttcacaaggaagaaaa
ggaagaaaggataatgactgtaaaaaacaccaatgaaaaagaaccggtgtgttcagagtgtttttttgaaaaatcggttatttttgttattatttgtgag
ctgaacaagctgtaacatttttttatttgaaaacaaaaccgcatttgaatcatgaaaaaactttttgcgttcctttttctcctgagctctgtttctttcg
TTG

    CT0542 Gene: CT0542     GI: 21673377     BI number: CT0542     GOG: -------     Description: hypothetical protei aa a  a a  g        t g  a      g  t t  a      t  t a  c       gt a  c       at cg        gt cg        at at        cg cg        ta at        ta a  g      g  a a  |      t  a a  |      g  | at        ta at        gt t  |       gc gc        cg ta        cg cg        at             tatttttgttattatttgtgagctgaacaagctgtaacatttttttatttgaaaacaaaaccgcatttgaatcatgaaaaaactttttgcgttcctttttctcctgagctctgtttctttcgTTG     ..................................................................................................................