Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:186 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-12.60 kcal/mol
Antiterminator: Size=48 nt.     Delta G=-15.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCGGGCACATCGCCGAGCGGCACACCGTGTGGAGGCTGTGCCGGTTCAGCAGCTTGCG
CGTCGAAGCAAACGACGAGCCCGAAGCGAGCTTGATCTTGAGCCAGTCGGGTTTCTTT
CCGGGACCAGAGTTCATGCAGCGGTATCAGAACTGAAGTTGAAAAAGACTTCACGAAT
ATAGCCAATCCTGACAATTATGCCTGCTATCGCCAGATGGAAGACGTGGCCGGAGTGG
ACAGAGAGACTTGAAAACGGTACATTGTTGAAAGGAACCGCTCCGATCAAtcgctcatttttc
cgatcATG

    CT1080


Gene: CT1080     GI: 21673906     BI number: CT1080     GOG: NOG16465     Description: hypothetical protei


  C
G  A
A  A
A  A
 GC
 CG
 TA
 GC
 CG
G  A       TC
 CG       A  T
 GC       G  T
|  C       TG
|  C       TA
|  G       CG
 TA        GC
 TA       A  C
 CG       G  A
 GC       C  G
|  G      G  |
A  A      A  |
 CG        AT
 GC        GC
|  T       CG
 AT        CG
 CG        CG
 TA        GT
            TTCTTTCCGGGACCAGAGTTCATGCAGCGGTATCAGAACTGAAGTTGAAAAAGACTTCACGAATATAGCCAATCCTGACAATTATGCCTGCTATCGCCAGATGGAAGACGTGGCCGGAGTGGACAGAGAGACTTGAAAACGGTACATTGTTGAAAGGAACCGCTCCGATCAAtcgctcatttttccgatcATG
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