                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G= -8.70 kcal/mol
Antiterminator: Size=24 nt.     Delta G= -4.80 kcal/mol
Anti-antiterminator:   Size=45 nt.     Delta G=-16.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATATCCTCGACCAGCTTTTTGGCAACCTTGTAGTTGACATCGGCGCTCAAGAGGGCAC
GCTTGATGTCGCGCATCGCGATACCGATGTTGACCTCGTTGATCGTCGCCTGACCGGC
GAGTTTTTTTAAGGTCAGCTCAAGTTTGTCACTGAGATTGTCGAACATattgaacctgtcacag
aaattctaaaaatggatagctttaaatataaaaatattcttgtaaaataaaaccaaacgatgcgaccgtcaccaaactattttcgattatattagctaaa
ccaatttcagagcatagcttATG

    CT1168 Gene: CT1168     GI: 21673994     BI number: CT1168     GOG: COG2870     Description: carbohydrate kinase, PfkB famil   A C  T GC CG GC CG TA GT TA A  C GC                   G TG         T       C  C TA       C  C      T  C |  T       CG        GT CG        AT        CG GT        GT        TA C  |       TG       A  C AT        TA        GC CG       |  T       TG G  A       GC        TG GC        TG        GC GC        AT        CG AT        GC        TA GC        CG        CG                         TTTTTTTAAGGTCAGCTCAAGTTTGTCACTGAGATTGTCGAACATattgaacctgtcacagaaattctaaaaatggatagctttaaatataaaaatattcttgtaaaataaaaccaaacgatgcgaccgtcaccaaactattttcgattatattagctaaaccaatttcagagcatagcttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase ... can be seen here     ..................................................................................................................