                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:157 nt.     Distance to run of Ts=0 nt.   Size=23 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=20 nt.     Delta G= -3.80 kcal/mol
Anti-antiterminator:   Size=43 nt.     Delta G=-15.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCGTGTTTAGGCTCTTCTGGTGCAGCTATTTTTGCGGTTTTAGATTTTGCAGATTTT
GGTTTGGTTTCAGCGCTTGCAGCGGCTTTTTTAGCCGTTTTTTTTTCGGGCGTTACTT
CTGGAGCCTCTTTGGCGGTAGATTTTTTAGCCATggtattcagagatattcttcgatgaattatttcgtccggaa
ccgggcgttcatataaaaaaactgcgcccaatgtaagaacaagataatcaattcaactgctcagagtaaagagggttcgtcacgatttcaccagtctgca
ataatcataATG

    CT1200 Gene: CT1200     GI: 21674026     BI number: CT1200     GOG: -------     Description: hypothetical protei   T T  T T  T TA CG GC GC CG GT AT |  T |  T |  T |  T                  T |  T                C  T |  T       TT       T  T C  T      C  C       CG GC       A  T       CG TG       T  G       GC TG       T  G      A  G CG       G  A      G  G GC        CG        GT CG        GC        TA GT        GC        CG AT        GT        TA                         TTTTTTAGCCATggtattcagagatattcttcgatgaattatttcgtccggaaccgggcgttcatataaaaaaactgcgcccaatgtaagaacaagataatcaattcaactgctcagagtaaagagggttcgtcacgatttcaccagtctgcaataatcataATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tepidum_TLS                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:197 nt.     Distance to run of Ts=0 nt.   Size=19 nt.     Delta G= -9.00 kcal/mol Antiterminator: Size=43 nt.     Delta G= -4.80 kcal/mol Anti-antiterminator:   Size=38 nt.     Delta G= -7.40 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GGCGTGTTTAGGCTCTTCTGGTGCAGCTATTTTTGCGGTTTTAGATTTTGCAGATTTT GGTTTGGTTTCAGCGCTTGCAGCGGCTTTTTTAGCCGTTTTTTTTTCGGGCGTTACTT CTGGAGCCTCTTTGGCGGTAGATTTTTTAGCCATggtattcagagatattcttcgatgaattatttcgtccggaa ccgggcgttcatataaaaaaactgcgcccaatgtaagaacaagataatcaattcaactgctcagagtaaagagggttcgtcacgatttcaccagtctgca ataatcataATG     CT1200 Gene: CT1200     GI: 21674026     BI number: CT1200     GOG: -------     Description: hypothetical protei             G           T  G   A       T  T T  G      T  T T  A       GT T  T       GC T  T       TA GT        TG GT       T  C CG       T  G GC       A  C TA        GT TG        AT         T TA        CG       T  T |  T       GC       T  T T  T       TA        TA T  T       TG        CG AT       T  C       GC TG       T  G       GC CG       A  G       CG GT        GC        GT AT        AT        AT                         TTTTTTTCGGGCGTTACTTCTGGAGCCTCTTTGGCGGTAGATTTTTTAGCCATggtattcagagatattcttcgatgaattatttcgtccggaaccgggcgttcatataaaaaaactgcgcccaatgtaagaacaagataatcaattcaactgctcagagtaaagagggttcgtcacgatttcaccagtctgcaataatcataATG     ..................................................................................................................