Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:149 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G=-12.40 kcal/mol
Antiterminator: Size=45 nt. Delta G=-14.56 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-14.32 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGCGACTGGGGGTTGAAGAACCCCGCGCCGAGCAGACGTCCGTCGTGGGTGAAGAGCT
GAACGGTTTCTCCGGCGGCAATGTCACGCGGCACCTCCCGAAGCTCGTTGCTGAAAAC
CCACAGGTGGCCGCTGACCAGCCGCCGGTGTTCTTTTGGTTTGAGGTAGAGTGAGTGC
ATggatcgaaaactcccggtttcatgttttgacagagaaatgatttaattaaaataacatttcggagctatcaaccttgaccgggattcagattcaacg
ggaagagtggttcggatggattgagctATG
CT1212
Gene: CT1212 GI: 21674037 BI number: CT1212 GOG: ------- Description: hypothetical protei
GT
T C
A A G
A C C T
CG T T
GC CG
G G GC
CG AT
GC | G
G A | A
C C | A
C C | A
T T | A
C C A C G
T | G C T A
T | C C C C
T | C A G C
GC C C C A
GC TA CG
CG CG GC
A A CG GC
A | AT TG
G | | G GC
TA CG GC
CG GC A G
GC GC CG
AT CG AT
GC GC CG
TTCTTTTGGTTTGAGGTAGAGTGAGTGCATggatcgaaaactcccggtttcatgttttgacagagaaatgatttaattaaaataacatttcggagctatcaaccttgaccgggattcagattcaacgggaagagtggttcggatggattgagctATG
..................................................................................................................