Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:186 nt. Distance to run of Ts=2 nt. Size=30 nt. Delta G= -7.52 kcal/mol
Antiterminator: Size=49 nt. Delta G=-10.80 kcal/mol
Anti-antiterminator: Size=47 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATCGAAGGGGTTCTCGTTCTGGTTCAGCTTGACCTCAGCCTCCTGGCCACCCTCGACC
TTATAAGTCTCGATATGCTCCAGGGCAGGATTGAGCATggtcctgagatctcttttcatgatgcttgattta
ccggttttcgacgtcttaagaggtggtgccagtataaaactggtcgcaacaccatccaagaaacgattttttgcatttttcgtaaaaaaaaactggacag
ggaattttttttcactacattaaaaaaggacaaaaattatcctctttatccaaacaaacaaggagcgaccATG
CT1257
Gene: CT1257 GI: 21674080 BI number: CT1257 GOG: ------- Description: hypothetical protei
AT
T A
TG TA
T A CG
C C | T
GC C C
AT AT
C C GC
TA CG
TG TA
GC C T G
GC C A T A
T T C T T G
C C A G A C
T C C C G A
T | C T G T
GT GC A g
CG GC Cg
TG TA Gt
C C CG Gc
T C CG Gc
TA | G At
GC | C Cg
GC TA | a
GC CG Cg
GT CG Ta
tctcttttcatgatgcttgatttaccggttttcgacgtcttaagaggtggtgccagtataaaactggtcgcaacaccatccaagaaacgattttttgcatttttcgtaaaaaaaaactggacagggaattttttttcactacattaaaaaaggacaaaaattatcctctttatccaaacaaacaaggagcgaccATG
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