Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:141 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-13.30 kcal/mol
Antiterminator: Size=57 nt. Delta G= -5.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTAAAAGAGAACACCCGTTTCGTACGCATCACCTCTGCTGGCCTCCGCGAAAGCCACC
CGCACGATGTGATGATAACCAAAGAAGCACCGAACTACTCGACCTCTGCATAAgaatccag
cacaccacactcgaaaaccccggttcaatgccggggttttctggttttggcgaaaaaagatcgccaatatctgccggatcagtctaatcggaaaaatgat
tattttgaaagaggtaacgccttttcgacgaaacagcgaaacccgttttttaccaactctctccagtcaagaagccaaatcATG
CT1294
Gene: CT1294 GI: 21674117 BI number: CT1294 GOG: NOG04042 Description: conserved hypothetical protei
a
g a
A t
A c
T c
A a
Cg
Gc
Ta
| c
| a
| c
| c
C a
T c
C a
C c
At
Gc
Cg
Ta
C a a
A a c a
T a t t
C c tg
A c gc
A c gc
Gc cg
Cg cg
Cg cg
At cg
ttttctggttttggcgaaaaaagatcgccaatatctgccggatcagtctaatcggaaaaatgattattttgaaagaggtaacgccttttcgacgaaacagcgaaacccgttttttaccaactctctccagtcaagaagccaaatcATG
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