Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:147 nt. Distance to run of Ts=2 nt. Size=19 nt. Delta G= -9.80 kcal/mol
Antiterminator: Size=48 nt. Delta G= -9.89 kcal/mol
Anti-antiterminator: Size=67 nt. Delta G=-17.97 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGTTACGGCATCAAAATTACCCTGCTCGACTCGACCAAAAATCTCTGGTCACTTGAAT
ATCATCGCCAGATGATCTGAacccccaagacggtcgagcactcccgttttttattctcttttcagcggggctttaccgctgcatc
tttttcttttcaacATGGTATCTCCGTTTTTGCGCCGCGAAAAAAATTTTTTGATGAACGCAGG
AATCGGTGGGGTGGCGTCGTCCTATGGGGTGAAAAAGGATCCCTATTGAtgaattcaggcgcct
cgaatacaaaagcaaacgaaagtaaaacgATG
CT1309
Gene: CT1309 GI: 21674132 BI number: CT1309 GOG: ------- Description: hypothetical protei
CC
G A
CG
TA
AT ca
CG g c
TA at
AT gc
T C c |
A T t |
A G gc
G A gc
T a cg
T c at
C c gt
A c at
C | at
T | | t
Gc | t
Gc | a
Ta | t
C | | t
Ta | c
Cg | t
Ta | c
A c | t
A | | t
A | | t t
A | | t c t
A | | c g t
Cg | a g a
Cg | g gc
At | c gc
Gc cg cg
Cg cg gc
Ta cg at
Cg cg cg
catctttttcttttcaacATGGTATCTCCGTTTTTGCGCCGCGAAAAAAATTTTTTGATGAACGCAGGAATCGGTGGGGTGGCGTCGTCCTATGGGGTGAAAAAGGATCCCTATTGAtgaattcaggcgcctcgaatacaaaagcaaacgaaagtaaaacgATG
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