                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:139 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=56 nt.     Delta G=-25.50 kcal/mol
Anti-antiterminator:   Size=35 nt.     Delta G=-12.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCGGGCAAGCAACGACATCGATGGGCCATAATAATCAGCCGATGAGGAGATGCCGTGA
AGCAGCAGCATCACGGGTGCGTTGCCTCCGGTGTCGATATAACGGTGGCGGTGACCGC
CGAGAGTAATATATCTGCTCCGGATTGGCATggacgggcggtttgttgaggtgatagtcgcgaggcctgtctggcag
cactcaaaaataatcaatgatcaccaaaaaaagagcatacgcgcacaggaggacgatttatttataaaaacggatgacgtcgcctctttgtttattgaaa
aaaatgtATG

    CT1311 Gene: CT1311     GI: 21674134     BI number: CT1311     GOG: -------     Description: hypothetical protei             G           T  A            GC            GC            CG            GC            GC            TG           |  A           G  G           G  A            CG   T        AT A  A      |  A G  T      |  A C  A       AT TA        TA        GC GC        AT       G  A TG        TA       T  T G  G       AT       T  g GT        GC       A  g CG       C  T      G  a CG        TG        Gc T  C       GC        Cg CG       T  T       Cg CG        GC       T  | G  T       GC        Cg T  G       CG        Gc TA        CG        Tg GC        TA        Cg                         tttgttgaggtgatagtcgcgaggcctgtctggcagcactcaaaaataatcaatgatcaccaaaaaaagagcatacgcgcacaggaggacgatttatttataaaaacggatgacgtcgcctctttgtttattgaaaaaaatgtATG     ..................................................................................................................