Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:143 nt. Distance to run of Ts=2 nt. Size=25 nt. Delta G= -7.90 kcal/mol
Antiterminator: Size=72 nt. Delta G=-11.52 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ggtttggggttcaaaaaaaatatcatgtgctattgctatcagattagccgcaaccgatactgaatgaccagatgcgtctcttgagcaaatttatgaaaag
taatgctattcttcgtatgaagggttccctcaatgccgaaaagggggaaaattatttgccggaatccggggttgtcagtacaggattggctcatctgttc
atgttctcctcaaatccggtgatggcatcgtttttggggactccttgcgaaacacgataacggtgagttggagttgtaacccatttcacgacaaatatct
ATG
CT1352
Gene: CT1352 GI: 21674174 BI number: CT1352 GOG: ------- Description: hypothetical protei
a
a a
g a
tg
at
ta
ta
t |
a |
a |
at
cg
gc
at
g a
t t
t t
c c
t t
c t
t |
gc
cg
gt
ta
at
| g
| a c
g a c g
a g g a
cg t a
cg a a
at a a
gt cg
| c tg
t c cg
a c cg
at cg
gc ta
ta ta
aattatttgccggaatccggggttgtcagtacaggattggctcatctgttcatgttctcctcaaatccggtgatggcatcgtttttggggactccttgcgaaacacgataacggtgagttggagttgtaacccatttcacgacaaatatctATG
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