                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:73 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-15.70 kcal/mol
Antiterminator: Size=38 nt.     Delta G= -6.20 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -4.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gccttttttgacaaggcaatGCCCGAATGGCGGAACTGGTAGACGCACTCGTTTCAGGGGCGAGCG
CCGAGAGGTGTAGGAGTTCGAATCTCCTTTCGGGCACCAacgTTATGCAAGATTCTCAT
GTGCACGATGATCAGAGTTAAGGAATTTTCCAGTTTGTTGTTTTGAAATAATTTTGAA
TACAAGGCAAGCACCTTCCATGGAGGTGCTTTTTTGCTTCTTTTTAATTTCTAAACCG
GTGTCGTAGTGGATCATACAAAAATCAATCTCATCGTTCGCCTTCAGCACatcgacaacAT
G

    CT1375 Gene: CT1375     GI: 21674197     BI number: CT1375     GOG: COG1579     Description: conserved hypothetical protei AG A  G TA TA GT AT GT        AA         A AT       T  T      C  T C  C       AT       C  G T  C       AT        TG A  A       AT        TA G  G      G  G       CG T  T       TA        CG AT        TA        AT GT       T  T       CG CG        TA        GC |  T       GC        AT AT        TA       |  T CG       |  A      |  T GT       |  G      |  T T  T       TG       |  T G  T       GC        AT T  |       TA        CG AT        TA        GC CG        TG        GT TA        GC        AT                         CTTTTTAATTTCTAAACCGGTGTCGTAGTGGATCATACAAAAATCAATCTCATCGTTCGCCTTCAGCACatcgacaacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_tepidum_TLS                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:83 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G=-12.10 kcal/mol Antiterminator: Size=38 nt.     Delta G= -6.20 kcal/mol Anti-antiterminator:   Size=50 nt.     Delta G= -4.00 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case gccttttttgacaaggcaatGCCCGAATGGCGGAACTGGTAGACGCACTCGTTTCAGGGGCGAGCG CCGAGAGGTGTAGGAGTTCGAATCTCCTTTCGGGCACCAacgTTATGCAAGATTCTCAT GTGCACGATGATCAGAGTTAAGGAATTTTCCAGTTTGTTGTTTTGAAATAATTTTGAA TACAAGGCAAGCACCTTCCATGGAGGTGCTTTTTTGCTTCTTTTTAATTTCTAAACCG GTGTCGTAGTGGATCATACAAAAATCAATCTCATCGTTCGCCTTCAGCACatcgacaacAT G     CT1375 Gene: CT1375     GI: 21674197     BI number: CT1375     GOG: COG1579     Description: conserved hypothetical protei AG A  G TA TA GT AT GT        AA AT       A  T C  C       GA T  C       TA A  A       TT G  G      T  T T  T       TT AT        GT GT       T  G CG        TA         A |  T       GA       C  T AT        TT       C  G CG       |  A       TG GT       |  C       TA T  T       TA        CG G  T       TA        CG T  |       GG        AT AT        AG        CG CG        CC        GC TA        CA        AT                         TTTTTGCTTCTTTTTAATTTCTAAACCGGTGTCGTAGTGGATCATACAAAAATCAATCTCATCGTTCGCCTTCAGCACatcgacaacATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding ... can be seen here     ..................................................................................................................