Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:105 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G= -9.00 kcal/mol
Antiterminator: Size=36 nt. Delta G= -6.73 kcal/mol
Anti-antiterminator: Size=59 nt. Delta G=-11.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTTTGGCGTAAGCTTCGAGGACGAACTGCTGCGCGTGACGATCCACTCCGCACTGCAC
CTCATGGGCTACGACGACGAAACTAGTGAACTGCGAGCAGCGATGAGCCTTCGGGAGG
ATCACTATCTTTATCGCCTCAGGCACTGAtatttccctgtcgttcgacacctgatcgttgtatcggggatagaattttt
tactaaattatcctcataaaatccccgcatttagttccctgcgccgttcagctcaccgttgatggcgatgcgcggaggctctgctaatgaaaaattttta
cggcaATG
ق
Gene: csmI GI: 21674204 BI number: CT1382 GOG: ------- Description: chlorosome envelope protein
C
T A
CG
CG
GC
C A
T C
A T
T |
T | tt
T | g c
CG cg
TA ta
At gc
Ta ta
C t c |
A | c |
C | c | tt
T | t | g g
At t | c t
Gt t | ta
Gc a | at
A | t | gc
Gc A | tg
Gc G | cg
Gt T | cg
Cg C | a g
T t A | c a
T c C | a t
C | Gc g a
Cg Gc cg
Gt At ta
At Cg ta
Gc Ta gt
tttttactaaattatcctcataaaatccccgcatttagttccctgcgccgttcagctcaccgttgatggcgatgcgcggaggctctgctaatgaaaaatttttacggcaATG
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