                                                                        Gene putatively regulated by attenuation in C_tepidum_TLS

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:143 nt.     Distance to run of Ts=3 nt.   Size=26 nt.     Delta G=-12.20 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -8.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTTTTTGCCTTTGAGGACGGTTCTCAGGTTGCTCTGCGAGAGCGAACCACTCAGTTTC
GAGGCGACGAGCAGATAGTAAATCGGCGCGCCGAGAATTACGAGATCGAACTCTTCGA
CGAAGCTGTAGTCCGCGTTGGGCTTGCAGCGGGCTTTTTCCACATACGCTCCGGCCTG
GGCAAGATTTCTGCCGATAGCATCAATCAGCCTGTCCGCAGAACCACCGACGGCCATG
CTGTCATACAGGATAATGACCTTTTTTGGCGTGTCGATGGTGCTGGTCATgggtgttggcgtt
tagaaTTG

    CT1481 Gene: CT1481     GI: 21674301     BI number: CT1481     GOG: -------     Description: hypothetical protei   T C  C AT AT GC CG TA |  C |  G |  A |  A A  G GC AT G  | CG         G AT       C  T TA       G  T TG        CG A  |       CG AT        TG GC        GC A  |      |  T GC        AT CG        TG C  |       GC GC        TA CG        CG GT        GC             GGGCTTTTTCCACATACGCTCCGGCCTGGGCAAGATTTCTGCCGATAGCATCAATCAGCCTGTCCGCAGAACCACCGACGGCCATGCTGTCATACAGGATAATGACCTTTTTTGGCGTGTCGATGGTGCTGGTCATgggtgttggcgtttagaaTTG     ..................................................................................................................