Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:181 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G= -8.60 kcal/mol
Antiterminator: Size=44 nt. Delta G= -9.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCGTAACGGCGTCGTCAAGAAACGTTTCGTAGAAATCCCCCACGCGGAATAGCAGCAG
ATAGCCAGGATAACGCTCCTTGACCTCGAGATACTGGCGCATCATCGGTGTCGGTTCT
TTTGTGCGGCCCTGAGCGCTTTTTGCCATgatgagatcgcgggatgagattgtcgtgtgctgaaaggaaaattaagcta
aagcagcggcaataaatatacaagtccgcaagaaagcttgaaaagctctgagcaactccatattttggattaccattttatccggcaatcaaccatcgtt
ctctcATG
CT1504
Gene: CT1504 GI: 21674324 BI number: CT1504 GOG: ------- Description: hypothetical protei
A
G C
T C
T T
C C
CG
TA
CG
G A
C T
A A
A |
T |
A | A
G | C T
GC T C
AT A G
CG CG
CG GT
GC CG
| G GT
A C GC
TA TG
AT CG
GC AT
TCTTTTGTGCGGCCCTGAGCGCTTTTTGCCATgatgagatcgcgggatgagattgtcgtgtgctgaaaggaaaattaagctaaagcagcggcaataaatatacaagtccgcaagaaagcttgaaaagctctgagcaactccatattttggattaccattttatccggcaatcaaccatcgttctctcATG
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