Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:67 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G=-14.00 kcal/mol
Antiterminator: Size=57 nt. Delta G= -6.60 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -7.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTGGTGATGAACGAGCTCGACCGCTTCCACCTGGTAGCCGACGTAGCCAACCGCGTGG
AGAGCCTCAGGCCACAAGCTGCCTACATCAAACAATACGTCCGCGACCGCCTGATCGA
GCACAAGGAGTACATCACGAAATATGGCGAGGATATGCCGGAAGTGAGGGATTGGCGC
TGGGAGGATTGAtttgatgtgatatgaaaagaaaagcggcctttgacaggccgctttttgtgttggaggtagggagagtcagattgtcagc
ttaacctgttttgccaatatcttggttctcgatgcATG
CT1523
Gene: CT1523 GI: 21674343 BI number: CT1523 GOG: ------- Description: hypothetical protei
at
g g
t t
tg
ta
At
| a
G t
T g
T a
A a
G a
G a
AG A g
A T G a
G G G a
G A G a
CG Ta
CG Cg
G G Gc
T | Cg g
A | G g t a
TA G | t c
AT T | ta
GT T | cg
G G A | cg
A G Gc gc
GC Gc gc
CG Gt cg
GC At gc
GT Gt at
ttttgtgttggaggtagggagagtcagattgtcagcttaacctgttttgccaatatcttggttctcgatgcATG
..................................................................................................................