Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:104 nt. Distance to run of Ts=0 nt. Size=40 nt. Delta G=-10.54 kcal/mol
Antiterminator: Size=46 nt. Delta G=-19.00 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-20.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTTCAAGCTCCGTATGCTCTTTCGCGTAGTCGATCGAGCCGATCGAATCGGTGCCCT
TGAAGAGCATGTGTTCGAGGTAGTGCGCCAGGCCGGTGGTCTCGGCGGGGTCGTTCTT
GCTGCCCGCCCGCACGGCGATGGAGGTGTAGATTCGCGGCTCGTCGTGGTAGGGACTC
ATATAGACCGTGAGGCCGTTTTTCAGCGTGTAAATCCGCGTTTGAAGCGCGTCGCCGG
GGACGGTGGTGTATGGATAACTTTCGTTCTGGTTCGTCTTGGTTTCTGTCATggttgatct
acaggatATG
CT1547
Gene: CT1547 GI: 21674366 BI number: CT1547 GOG: ------- Description: hypothetical protei
CG AT
T T G T
GT A C
GC TG TC
GT GC C A
GT TG A T
CG G G G A
GC GC G T
GT AT G A
CG G | A G
| C GC TA
| C TG GC
T C AT GC
C G GC TG
T C CG GT
GC GT CG
GC G G TA
TG CG G |
GC AT C |
| A C A TG
GC G | CG
CG CG GC
CG CG GC
GC CG CG
TTTTTCAGCGTGTAAATCCGCGTTTGAAGCGCGTCGCCGGGGACGGTGGTGTATGGATAACTTTCGTTCTGGTTCGTCTTGGTTTCTGTCATggttgatctacaggatATG
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