Gene putatively regulated by attenuation in C_tepidum_TLS
Characteristics of the secondary structures
Terminator: Distance to gene:152 nt. Distance to run of Ts=2 nt. Size=18 nt. Delta G= -6.30 kcal/mol
Antiterminator: Size=37 nt. Delta G= -9.00 kcal/mol
Anti-antiterminator: Size=52 nt. Delta G= -8.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTCAGACTGCGGGGTCGAATTGCCGCCGCATCCTGCGAAAAGCAGGGCGGTGCAGAGC
GGGAGAATCCGGATGATGTGTGCTGGTCGCATgggtgaggtggttttattttcggtggaaagcttaccttgaaagg
tagggaatttttgtgtgagacgacagtggcgcgattgttgtggagtgtttgaagggtttgtcggatgttgctgtgtgcgtcttataatggactgaagatc
aaaaatccgcgtcttatgcggatcaatctaattaatgttgggtaccattaacaggagccgctctccATG
CT1657 --- CT1656
Gene: CT1657 GI: 21674475 BI number: CT1657 GOG: NOG25771 Description: conserved hypothetical protein
Gene: CT1656 GI: 21674474 BI number: CT1656 GOG: ------- Description: hypothetical protei
TG
G C
T T
G G
TG
AT
GC t
TG t c
A C t g
G A tg
GT at
Cg tg
Cg tg
Tg ta
At ta
A g g a
G a g g
A g t | ga
G g g | t a
G t gc ta
G g at cg
Cg gt cg
Gt ta at
At gc ta
Gt gc tg
At gt cg
gaatttttgtgtgagacgacagtggcgcgattgttgtggagtgtttgaagggtttgtcggatgttgctgtgtgcgtcttataatggactgaagatcaaaaatccgcgtcttatgcggatcaatctaattaatgttgggtaccattaacaggagccgctctccATG
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