Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:105 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-13.70 kcal/mol
Antiterminator: Size=46 nt. Delta G=-17.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGCTTCAAGCGTTTCTTCCACGCCATGCTGGACGAAGGCGTCTACTTCGCGCCGTCC
GCCTACGAAGCCGGCTTCGTCTCCGCCGCGCACAGCGAGCAAATGATCGAATCCACCC
TCGCCGCGGCGGGCCGGGCTTTCGCGCGCCTCTGAccacaggcggctgcaaaccagggagcctcaggctccctt
ttttattgcgctgaagaaaacggcttggcttggtaatattgccgccgaattcaaaaaatcattcgggccggacaggcctgcgggacattgcggcagtgaa
ggggatgtggATG
CV0066
Gene: CV0066 GI: 34495521 BI number: CV0066 GOG: ------- Description: hypothetical protei
cc
A a
Gc
Ta
Cg
Tg
| c
Cg
Cg
Gc
| t
Cg
Gc
| a
| a
| a
| c c
C c t a
G a cg
Cg cg
Tg gc
Tg at
Ta gc
Cg gc
Gc gc
Gc at
tttttattgcgctgaagaaaacggcttggcttggtaatattgccgccgaattcaaaaaatcattcgggccggacaggcctgcgggacattgcggcagtgaaggggatgtggATG
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