Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:0 nt. Distance to run of Ts=3 nt. Size=17 nt. Delta G=-11.10 kcal/mol
Antiterminator: Size=47 nt. Delta G= -7.87 kcal/mol
Anti-antiterminator: Size=19 nt. Delta G=-11.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GGCACCAGCATCGCCGCCAATGTCGAGCAGGTGGCGCAGATGTCGGAGGAAACCAGCG
CCGCCGCGACCCAGACCGCCGAGGCGGCCAGCCAGGTGGAGCAGATGGCCGGCGCGCT
GCAGTCGGCGATCAGCCGCTTCAGGCTCCCGGCAGGCGGCCAGCCGCAAAGCTCGGAC
AGAACCGCGCAGCCCTTGGCCGCGACCGCCTGGCAGGCTTGAgccggcgagttttccacagcaaggccc
cgccttgctcccgcaccttcctctctcgttctggcccgcctcgcgcgggcatctttcTTG
CV0264
Gene: CV0264 GI: 34495719 BI number: CV0264 GOG: ------- Description: hypothetical protei
cc
t c
cg
gc
ta
| c
| c
| t
| t
| c
| c
| t
| c
| t
| c
| t
| c
| g
| t
| t
| c
t t
c cg
c c cg c
cg gc t g
gc c c c c
gc c c cg
at c | gc
at cg cg
cg gc cg
gc gc cg
at at gc
atctttcTTG
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