                                                                        Gene putatively regulated by attenuation in C_violaceum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:204 nt.     Distance to run of Ts=1 nt.   Size=21 nt.     Delta G= -6.20 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -9.90 kcal/mol
Anti-antiterminator:   Size=40 nt.     Delta G=-15.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

atcctttgacaattattgattccagcaggatagcgatgcccggggcggaaaaatattgtaccgaagcgctaaaaatgcggttcattttgtattttgtcag
acatgttgaatggatagtatgagcaggcctagaccatctacatgaaatacatacctgacacttagtatgggtttggctataaaccggtaagaaaaggggg
agcagggcgccgaaatcgcggggatgacgctggcgccgtataatgtctgacagttcgggccatcccgcggcaccgctgtcactgtcgcggggaattcatc
ATG

    CV0312 Gene: CV0312     GI: 34495767     BI number: CV0312     GOG: -------     Description: hypothetical protei   t G  a        a T  g      a  a A  c      a  t cg       a  a ta        gt at        gt cg        cg t  |      g  t t  |      g  a a  |       gc a  |       gc g  |       cg         a gc       c  a      a  a gc       c  a      a  a gc       g  g      t  t cg       t  |       cg g  g      a  |       gc cg        gc        cg tg        cg       g  g gc        gc        at tg        at        at cg        ta        gc                         attttgtattttgtcagacatgttgaatggatagtatgagcaggcctagaccatctacatgaaatacatacctgacacttagtatgggtttggctataaaccggtaagaaaagggggagcagggcgccgaaatcgcggggatgacgctggcgccgtataatgtctgacagttcgggccatcccgcggcaccgctgtcactgtcgcggggaattcatcATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_violaceum                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:211 nt.     Distance to run of Ts=1 nt.   Size=21 nt.     Delta G= -6.20 kcal/mol Antiterminator: Size=41 nt.     Delta G= -9.90 kcal/mol Anti-antiterminator:   Size=32 nt.     Delta G= -4.50 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case atcctttgacaattattgattccagcaggatagcgatgcccggggcggaaaaatattgtaccgaagcgctaaaaatgcggttcattttgtattttgtcag acatgttgaatggatagtatgagcaggcctagaccatctacatgaaatacatacctgacacttagtatgggtttggctataaaccggtaagaaaaggggg agcagggcgccgaaatcgcggggatgacgctggcgccgtataatgtctgacagttcgggccatcccgcggcaccgctgtcactgtcgcggggaattcatc ATG     CV0312 Gene: CV0312     GI: 34495767     BI number: CV0312     GOG: -------     Description: hypothetical protei             g           g  c ga       g  g g  t      g  g a  a       ca cg        ca gc        ca a  |      g  a G  |      t  a T  |       at A  |       ga cg        ct         a ta       g  t      a  a at       a  g      a  a cg       t  t      t  t t  |      a  |       cg t  |      g  |       gc a  |       ga        cg a  |       ac       g  g gc        cc        at gc        gg        at gc        aa        gc                         attttgtattttgtcagacatgttgaatggatagtatgagcaggcctagaccatctacatgaaatacatacctgacacttagtatgggtttggctataaaccggtaagaaaagggggagcagggcgccgaaatcgcggggatgacgctggcgccgtataatgtctgacagttcgggccatcccgcggcaccgctgtcactgtcgcggggaattcatcATG     ..................................................................................................................