Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:27 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-12.70 kcal/mol
Antiterminator: Size=39 nt. Delta G= -8.20 kcal/mol
Anti-antiterminator: Size=59 nt. Delta G= -6.31 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCAGTTCTCCGCCTTGGTCAGCTTCAGCTACAACCTGGGGCTGGGAAACCTCCGCAGC
TCCACGCTGCTGCGCCTGTTGAACAAGGGCGATTACGACGGCGCCGCCGCGCAGTTCC
CGCGCTGGAACCGGGCCGGCGGCCAGGCCGTGCCCGGACTGACTCGCCGCCGCAAAGC
CGAGCAGGCGCTGTTCCTGACGCCTGCCCCCTGCTGAgcttcacaagccgcctctccctccgtcctgacaaca
gtccgccggctccgccgcgggctgttttcgcactcaacctccggagatacgccATG
CV0726 --- CV0725
Gene: CV0726 GI: 34496181 BI number: CV0726 GOG: ------- Description: hypothetical protein
Gene: CV0725 GI: 34496180 BI number: CV0725 GOG: ------- Description: hypothetical protei
a
c c
ta
ta
cg
gc
A c
G |
T | ca
Cg a a
Gc gc
T c ta
C t cg
C c c t
C t t c
C c gc
C c cg
G c c c
T t t |
C c c |
C | c | c
Gc c | t c
Cg t | cg
At c | gc
Gc t | gc
T c c | c |
C t c | cg
C | gc gc
Tg cg cg
Ta cg cg
Gc gc tg
Ta at gc
tgttttcgcactcaacctccggagatacgccATG
..................................................................................................................