Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:24 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-11.40 kcal/mol
Antiterminator: Size=48 nt. Delta G=-10.36 kcal/mol
Anti-antiterminator: Size=32 nt. Delta G=-13.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CATATCCAGTACCTGGGATGCGGCGCGCTTCGACGCTCTGCTGGGCGAGTATTGCGAT
AAACAGCGGGATGCGGCTTCGGGCGTCGGGGAGAGCGGGTGAagtgcgtcccgcgatggcgcgcgctga
tgctcatgtcgcttttatcctgcgccccgctcctcgctgtacgcgggcgtggggcggggctgaacggcgtgggcggagcggaaagcacggtccgcagcaa
tgtgctgttcgccaaattcaacctgggctttgatcgcctgggtgttttttaaccatgagactaggagaaatcgATG
CV0756
Gene: CV0756 GI: 34496211 BI number: CV0756 GOG: ------- Description: hypothetical protei
t
a g
a t
cg
gc
at
cg
gt
c t
c c
tg
gc
a gc
a g | a
a c | a
g a | a
gc | t
cg | t
g g | c g
at | a t a
gc | a t t
gc | c t c
cg | c cg
gc | t gc
g a c g gc
g | a g g t
t | cg t g
g | gc cg
cg at cg
gc at at
gttttttaaccatgagactaggagaaatcgATG
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