Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:171 nt. Distance to run of Ts=0 nt. Size=16 nt. Delta G= -8.10 kcal/mol
Antiterminator: Size=45 nt. Delta G= -9.00 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G=-23.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGCTTGAAGTTCTTCAACAGCGCGCCCCAGCCCCAGTTGGTCGAACAGGCCTGCGGC
TGGACCGCCTTCGCGGCCGCCTGAcggcctcctcgccctcaaatcaaaacagcccgcaacgacgggctgttttgccatccgg
gcatggtcggatcaatgcctcatccaaaataattgatgtaagaaccattttacacatcgttacacaaaaccttcacgccgcccaaacaacacgtacatac
aagtaggccgacttttttcagaatagcgcctgatccatcaacccatgcagtcatgaagtcATG
CV0758
Gene: CV0758 GI: 34496213 BI number: CV0758 GOG: ------- Description: hypothetical protei
cc
t t
CC c c
A G cg
GC gc
GC gc
T T c c
C | At
GT Gc
GC Ta
CG | a
GC | a
TG | t
CG | c
| C | a
| C | a
CG | a
GC | a
GC | c
AT C a
CG Cg ac
A A Gc a g
A | C | c a
Gc C | gc
Cg Gc cg
Tg Gc cg
Gc Cg cg
Gc Gc gc
tgttttgccatccgggcatggtcggatcaatgcctcatccaaaataattgatgtaagaaccattttacacatcgttacacaaaaccttcacgccgcccaaacaacacgtacatacaagtaggccgacttttttcagaatagcgcctgatccatcaacccatgcagtcatgaagtcATG
..................................................................................................................