Gene putatively regulated by attenuation in C_violaceum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:46 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-20.90 kcal/mol
Antiterminator: Size=46 nt.     Delta G=-15.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGCAGCCGTCCGGCTACAACGGCAGTTTCTCGCAATTGGCTGCCGGCAATGGCAACAG
CCACTATCTGCAGGTAGTCGGCACCGACGCGCAGGGCAATGTCTACCTGGTGTCGTGG
CAAGACTCCGAAGGCAAGTGGCACGCCGGTTTCGAGTTGCCCAGGGCATCATGAtgccaa
gatgaagcatggattccggcctgcgccagccgggcggattcgaagccaggccctccacggcaaggagggcctgttttttgccggcgatcaggggtttgtg
aatggaaaaaaggagacccgctgaATG

    CV1053


Gene: CV1053     GI: 34496508     BI number: CV1053     GOG: -------     Description: hypothetical protei



  c
g  c
a  g
 cg
 cg
 gc
 cg
|  g
|  a
|  t
|  t
|  c
|  g
|  a
|  a
|  g
|  c        g
 gc       g  c
 ta       c  a
 cg       a  a
 cg        cg
 gc        cg
 gc        ta
c  c       cg
c  |       cg
t  |       cg
t  |       gc
 at        gc
 gc        at
 gc        cg
            ttttttgccggcgatcaggggtttgtgaatggaaaaaaggagacccgctgaATG
    ..................................................................................................................