Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:62 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G=-25.40 kcal/mol
Antiterminator: Size=50 nt. Delta G= -7.70 kcal/mol
Anti-antiterminator: Size=33 nt. Delta G= -8.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCTGGATCGCCTACGCGGCAAGCCTGATCAATTGGAGGCTGCGGTAACGTGGACACTG
CAAAGCTACGAGAAAGAAGCGCAGGGCTGAtcgtcatcgcgccgatcacagcccgtgaagaatgaatagccaagcagg
gtcagccagactggatgtcccgcttccagaggatgcatgatcatcaccgttgcgtgttcttctgacatgccagcctgcctgcggggtaggctggcatttt
atttcccgtatgaaacaagagaagctaccatccccgtctaatgactggcccataacagtcaacgATG
CV1236
Gene: CV1236 GI: 34496691 BI number: CV1236 GOG: ------- Description: hypothetical protei
t
t c
c t
tg
ta
gc
ta
gt
cg
| c
gc
ta
at tg
c c gc c
t a c c g g
a c c | t g
gc a | cg
tg c | cg
| t t | gt
at at ta
cg cg cg
gc t c cg
tg a c gc
at g | at
g g t | cg
gt at cg
at cg gc
gc gc ta
at tg at
tttatttcccgtatgaaacaagagaagctaccatccccgtctaatgactggcccataacagtcaacgATG
..................................................................................................................