Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:123 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-22.00 kcal/mol
Antiterminator: Size=58 nt. Delta G=-21.90 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-11.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGGATGACCGCGGCCGCATCCGCCTGTCCATCAAGGCGCTGCTGGAAGAAGAAGCGA
AAACCGCCCAAGCGACCGCTGACGCCTTCGGCCTGAAGACCCAGTAAgtccggttgatagccgtt
cctgcctggagcggacgccagccagaaccccctgccatggcagggggttttgttttaaatcgcgaggctgtttaattgactgatagcctggccgcttgcc
gttgatgcgagtccgctcgcgatcggtttccggctgcgcggcctggagcgaaaatagaaagtccgtaaatttgcccgATG
CV1467
Gene: CV1467 GI: 34496922 BI number: CV1467 GOG: ------- Description: hypothetical protei
c
g c
t t
cg
cg
ta
C tg
C A gc
CG cg
AT cg
| A g a
G A a c
A g t g
At a c
Gc gc
T c ta
Cg tg
Cg gc at
Gt gc c g
Gt c a cg
Cg cg gc
Ta ta ta
| t | a cg
Ta g c cg
Cg A c cg
C c A c cg
Gc T c cg
Cg Gc at
At At at
Gt Cg gt
tgttttaaatcgcgaggctgtttaattgactgatagcctggccgcttgccgttgatgcgagtccgctcgcgatcggtttccggctgcgcggcctggagcgaaaatagaaagtccgtaaatttgcccgATG
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