Gene putatively regulated by attenuation in C_violaceum
Characteristics of the secondary structures
Terminator: Distance to gene:146 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G= -6.00 kcal/mol
Antiterminator: Size=67 nt. Delta G=-18.70 kcal/mol
Anti-antiterminator: Size=44 nt. Delta G=-13.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
aagggccgtggcatcacccaccaatgggacaggtagcgttgcgggagggattttcacgggttgcaaaggtgttgcagattccggtatcctgaaactcggt
gctcaaaacacctactgtcagcggtcgccgcgcccgaaagatatgcggtttttttgcgtccatagatttcctatggccgggtgtgaggctaatacaagac
tcccgcaaggggggaatacgcccgccgtctgacagcggttttgagcccccggccaccctctcaaaaagggtaaattcaaaatatctgtcaggaggccatc
ATG
CV1476
Gene: CV1476 GI: 34496931 BI number: CV1476 GOG: ------- Description: hypothetical protei
a
c a
t a
c a
gc
ta
gc
gc
c t
t a
c c
a t
a g
g at
g t gc
a g ta
at cg
at c |
cg t |
gc a |
ta t |
tg g |
| a gc
| t cg
gt cg
gc t |
gc t | a
cg at a a
a g gc g g
c t a | c a
t | cg c t
t | gc c a
t | t c gt
ta tg cg
at gc gc
gc tg cg
gc gc cg
gt gc gt
ttttttgcgtccatagatttcctatggccgggtgtgaggctaatacaagactcccgcaaggggggaatacgcccgccgtctgacagcggttttgagcccccggccaccctctcaaaaagggtaaattcaaaatatctgtcaggaggccatcATG
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