                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:177 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-17.00 kcal/mol
Antiterminator: Size=72 nt.     Delta G= -6.55 kcal/mol
Anti-antiterminator:   Size=10 nt.     Delta G= -4.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATGTAATAAAAGCAGCAGATAAGCTTGAGAGGGAAATTATTGATAGAAGAGAAAAATT
AGGGCTTAATTAGattttcaataagttaaagagctaacgataaagttggctctttacttttttttatagcattaaataaattggcgaaaaa
agaaaaagatacaataaaatatatgtaaacaactaagtatatcattcgataattataataatgttcaattatttgtttgaaaaagtcaaaaaatatatta
taatgtacaattttgtatgtttatataaagcaatcataaggaggcattagcGTG

   𧅹 --- cheA Gene: 121     GI: 15893413     BI number: CAC0117     GOG: COG0784     Description: protein cheY homolog Gene: cheA     GI: 15893414     BI number: CAC0118     GOG: COG0643     Description: Chemotaxis protein che            AG           T  G           T  G           A  C           A  T           A  T           A  A           A  A           G  T           A  T           G  A           A  G           A  a           G  t           A  t           T  t            At            Gc            Ta            Ta        ta            At       a  a            Ta       g  a            Ta        cg           A  g       at           A  |       at           A  |       tg            Gt        cg            Gt        gc           G  a       at           A  a       gc           G  a       at           A  |       at           G  |       at TG        Tg       t  | G  A       Ta        ta cG        Cg        gc gC        Gc        at aT        At        at                         ttttttatagcattaaataaattggcgaaaaaagaaaaagatacaataaaatatatgtaaacaactaagtatatcattcgataattataataatgttcaattatttgtttgaaaaagtcaaaaaatatattataatgtacaattttgtatgtttatataaagcaatcataaggaggcattagcGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG0784 FOG: CheY-like receiver ... can be seen here [NT] COG0643 Chemotaxis protein histidine kinase and related kinases ... can be seen here     ..................................................................................................................