Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance from promoter:99 nt. Distance to gene:83 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-16.20 kcal/mol
Antiterminator: Distance from promoter:66 nt. Size=40 nt. Delta G= -4.90 kcal/mol
Anti-antiterminator: Distance from promoter:10 nt. Size=71 nt. Delta G= -5.80 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ATGATA-TAAaat. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATGATAACAATGGGAAAAGTGGCAAAATAAaattatggatgggattacaaagaactacttaatagcagtaattttgat
aaaaaattattaaagaatatacttcataattgtaataatgcagtgaaaagatgaaatgaagcggctgaatttaagtaagctgcttcattattttttagta
actcctcaagtataagcgtttataaaggatttcctagataattagaacaggcatttgtgcagagagagataccgtaaaGTG
CAC0345
Gene: CAC0345 GI: 15893636 BI number: CAC0345 GOG: ------- Description: Hypothetical protei
t
a a
g a
ta
ta
ta
ta
at
at
ta
gt
at
c a
g a ta
a a a a
t g at
a a tg
a a gc
t t ta
t a tg
c t at t
a a | g t a
t c | a t a
c | | a a g
at | a a t
at | a g a
gc | g ta
| a | a cg
| t | t gc
| a | g gt
a a | a cg
at a a gc
at ta at
cg at at
at cg gc
ta ta ta
ta ta at
at cg at
attttttagtaactcctcaagtataagcgtttataaaggatttcctagataattagaacaggcatttgtgcagagagagataccgtaaaGTG
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