Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:130 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-12.10 kcal/mol
Antiterminator: Size=65 nt.     Delta G= -7.28 kcal/mol
Anti-antiterminator:   Size=54 nt.     Delta G= -7.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

AAAAGCATCTCAATTATCTAATGGTTTAAACCAAATACAAAATAAGATGAAGGCTGGT
ACAGATGCTATAGTGGTACTTAATGAAACCACATCTATGTTTTCTTAAtaattaacagttaaat
acagataaattgaaagctgcgaaatggtaaaagattttcgcagctttattaatattagtaatataatattaaaaaaatgtcgaaaaaaatcgaataaatg
ctttagaaataaaattttcaggcgataaaattaatcataacagaatataagaattaaattatagaggggagaaaaataATG

    CAC0543


Gene: CAC0543     GI: 15893833     BI number: CAC0543     GOG: COG0840     Description: Methyl-accepting chemotaxis protei


            t
 AA       t  a
T  T      g  a
T  G      a  a
C  A      c  t
A  A      a  a
 TA       a  c
 GC       t  a
 GC       t  g
 TA       a  a
 GC       a  t
A  |      t  a
T  |      A  a
A  |      A  a
T  |      T  t
C  |      T  t
G  |       Cg
 TA        Ta
 AT        Ta         a
 GC        Ta       a  a
 AT        Tg       t  a
C  A       Gc       g  g
A  T      T  t      g  a
T  |      A  g      t  t
G  |      T  c       at
G  |       Cg        at
T  |       Ta        at
 CG       A  a       gc
 GT       C  a       cg
 GT        At        gc
 AT        Cg        ta
 AT        Cg        cg
 GC        At        gc
                        tttattaatattagtaatataatattaaaaaaatgtcgaaaaaaatcgaataaatgctttagaaataaaattttcaggcgataaaattaatcataacagaatataagaattaaattatagaggggagaaaaataATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[NT] COG0840 Methyl-accepting chemotaxis protein ... can be seen here

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