Gene putatively regulated by attenuation in C_acetobutylicum
Characteristics of the secondary structures
Terminator: Distance to gene:166 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -7.80 kcal/mol
Antiterminator: Size=68 nt. Delta G= -5.35 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AGTAGAAAAAGAAGTAAAGGGAAGTGTCGGGGAAAGTAATAATGTTATTAAATTGAAA
AATTCAGCAGGAAATATTGATATTGACAATTAAatacaagaaaataaaatggagttttaataaaactctattttat
ttatgtcaaagtgagttaacgttcacatgtaatagatttattttaatatatacagtattttgtatttaatactttaattatagcgattataagcgtttta
ccagtaagaatataattttacaatagagtaaaagtttaatataatctttaagtgttagggaaagttTTG
CAC0574
Gene: CAC0574 GI: 15893864 BI number: CAC0574 GOG: ------- Description: Pectate lyase H (FS
AA
C T
A T
G A
TA
Ta
At
Ta
A |
Gc
A Ta
A A Ta
AT A g
AT T a
GC A a
TA A a
TG A a
A C G t
A A G a
A G A a
TG C a
TA G a
A | At a
TA Cg a t
TA Tg ta
GT Ta ta
TA A g ta
AT A | ta
AT At gc
TG At at
A A At gc
AT Gt gt
TA Ta ta
GT Ta at
AT At at
ttatttatgtcaaagtgagttaacgttcacatgtaatagatttattttaatatatacagtattttgtatttaatactttaattatagcgattataagcgttttaccagtaagaatataattttacaatagagtaaaagtttaatataatctttaagtgttagggaaagttTTG
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