                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:29 nt.    Distance to gene:4 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-10.50 kcal/mol
Antiterminator:    Distance from promoter:23 nt. Size=22 nt.     Delta G= -7.00 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTCATA-TAGAGT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTCATAAATTGTATGATTTTCATATAGAGTTTTAAggtgtacctccagaataatttttacctttaagggtaaaa
atacttttggaggtgttttaaATG

    CAC0604 --- CAC0605 Gene: CAC0604     GI: 15893893     BI number: CAC0604     GOG: COG1182     Description: Acyl carrier protein phosphodiesterase Gene: CAC0605     GI: 15893894     BI number: CAC0605     GOG: COG0671     Description: Predicted phosphatas            aa           a  a            at ta        ta t  a       gc tg        gt cg        gt cg        at at        at ta        tg ta        tg ta        ta ta        cg ta        cg             tgttttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [I] COG1182 Acyl carrier protein phosphodiesterase ... can be seen here [I] COG0671 Membrane-associated phospholipid phosphatase ... can be seen here     ..................................................................................................................