                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:200 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G=-10.90 kcal/mol
Antiterminator: Size=36 nt.     Delta G= -7.95 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -3.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tgaaataaaaattcacatagtgaatataaataagctggggggcttaaatatagaattaagtttgctctctataaattggggcatagggatcaaacttttg
ttgaagtacagaaatcggttagtcataaaatataggaaaatagaggggtaaactattttcctataggtgacaaccgattttttatttttataataataaa
ctaaaaattttgtctattactttctgattaaaaaaaaatatataggggaataataatcgaagttaggtaatgagtatatttgctgaaaggattgattatt
ATG

    CAC0609 Gene: CAC0609     GI: 15893898     BI number: CAC0609     GOG: COG3459     Description: Cyclic beta 1-2 glucan synthetas tt a  g g  a gt at                  tg a  a       ga       t  g at       a  a      a  g gt       t  t      a  g tA       a  t      a  c |  T      t  a       ta cG       a  a       at gt       a  g       ta tg       a  t       cg tg       t  t       tg tg       t  t       cg a  g       cg        ta t  g       gc       c  t a  |       gt        gc tg        gc        ta gc        gt        ta at        gc        ta gt        gt        gc ta        ta        at                         tttgttgaagtacagaaatcggttagtcataaaatataggaaaatagaggggtaaactattttcctataggtgacaaccgattttttatttttataataataaactaaaaattttgtctattactttctgattaaaaaaaaatatataggggaataataatcgaagttaggtaatgagtatatttgctgaaaggattgattattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG3459 Cellobiose phosphorylase ... can be seen here     ..................................................................................................................