                                                                        Gene putatively regulated by attenuation in C_acetobutylicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:170 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G=-10.20 kcal/mol
Antiterminator: Size=43 nt.     Delta G= -3.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAGAACAGGAAGGAGATATATTTATAGCGAAAAAAATACAAATAACTCAGTGGGGGAA
TTAAtaaagtaaattaagattaaaacaaccgaatgtttagagtaatgttgcagtaaaaagcattactctattttagtgtaatatatgtagacatgat
tataaatgtaaaattgtaattataagtaacatgatagaaaaatttatatttatatcgtaacgttaagttatattaatattaaatttgacactattataaa
taaattagattaggtttcgttgtatatgaaagaaggaaatgttaaATG

    CAC0664 Gene: CAC0664     GI: 15893952     BI number: CAC0664     GOG: COG1653     Description: Sugar-binding periplasmic protei cg c  a a  a at cg at at at a  a        t tg       g  a ta       a  a a  g      c  a g  |      g  a a  |       ta at        tg ta        gc ta        ta at        at |  g       at at        ta at        gc tg        at gc        gc             tattttagtgtaatatatgtagacatgattataaatgtaaaattgtaattataagtaacatgatagaaaaatttatatttatatcgtaacgttaagttatattaatattaaatttgacactattataaataaattagattaggtttcgttgtatatgaaagaaggaaatgttaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG1653 ABC-type sugar transport system, periplasmic component ... can be seen here     ..................................................................................................................